Research Projects on Berzelius

(Updated on 2026-06-02)

Project Statistics

• Project title: Decoding CNS gene expression regulation
  Project duration: 2025-12-05 – 2026-07-01
  Principal Investigator: Enric Llorens, Karolinska Institutet

• Project title: Multimodal Graph Generative models for the Biomedical domain
  Project duration: 2025-12-05 – 2026-07-01
  Principal Investigator: Michail Vazirgiannis, Kungliga Tekniska högskolan

• Project title: Transferable Implicit Transfer Operators
  Project duration: 2025-12-10 – 2026-07-01
  Principal Investigator: Simon Olsson, Chalmers tekniska högskola

• Project title: Decoding macrophage plasticity
  Project duration: 2025-12-15 – 2026-07-01
  Principal Investigator: Emma Lundberg, Kungliga Tekniska högskolan

• Project title: Scalable Differentiable Monte Carlo for Probabilistic Inference and Learning
  Project duration: 2025-12-15 – 2026-07-01
  Principal Investigator: Niklas Wahlström, Uppsala universitet

• Project title: Amplification of enzyme activity with small molecule catalysts
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: Thomas Helleday, Karolinska Institutet

• Project title: Deep learning for protein research
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: Ingemar André, Lunds universitet

• Project title: Efficient studies of large-scale topological and unconventional superconductors
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: Annica Black-Schaffer, Uppsala universitet

• Project title: Medical image analysis at the Biomedical Imaging Division at KTH
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: Rodrigo Moreno, Kungliga Tekniska högskolan

• Project title: Deep learning modeling of single cell perturbations
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: Kasper Karlsson, Karolinska Institutet

• Project title: Advanced 3D Perception for Environment Understanding and Representation
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: Patric Jensfelt, Kungliga Tekniska högskolan

• Project title: Perception for Autonomous Vehicles
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: John Folkesson, Kungliga Tekniska högskolan

• Project title: Machine Learning for Computer Vision
  Project duration: 2026-01-01 – 2026-07-01
  Principal Investigator: Michael Felsberg, Linköpings universitet

• Project title: Deep Learning for the Physical World
  Project duration: 2025-12-29 – 2026-07-01
  Principal Investigator: Mårten Björkman, Kungliga Tekniska högskolan

• Project title: Deep learning for protein - DNA binding predictions
  Project duration: 2026-01-07 – 2026-08-01
  Principal Investigator: Emil Marklund, Stockholms universitet

• Project title: Dual-Arm Robotic Transformer Models
  Project duration: 2026-01-08 – 2026-08-01
  Principal Investigator: Volker Krueger, Lunds universitet

• Project title: High throughout prediction of toxin-antitoxin and other phage defence protein interfaces with AlphaFold2
  Project duration: 2026-01-08 – 2026-08-01
  Principal Investigator: Gemma Atkinson, Lunds universitet

• Project title: Neural representations for image synthesis and analysis
  Project duration: 2026-01-09 – 2026-08-01
  Principal Investigator: Jonas Unger, Linköpings universitet

• Project title: Computational Experiments for Automatic Program Repair, Prof Monperrus, WASP/KTH
  Project duration: 2026-01-09 – 2026-08-01
  Principal Investigator: Martin Monperrus, Kungliga Tekniska högskolan

• Project title: Modelling gene regulation and dosage-sensitivity
  Project duration: 2026-01-13 – 2026-08-01
  Principal Investigator: Tuuli Lappalainen, Kungliga Tekniska högskolan

• Project title: Data-Driven Biodiversity Modeling
  Project duration: 2026-01-14 – 2026-08-01
  Principal Investigator: Tobias Andermann, Uppsala universitet

• Project title: TestExtender: Using Large Language Models to Augment Software Test Suites
  Project duration: 2026-01-16 – 2026-08-01
  Principal Investigator: Gregory Gay, Chalmers tekniska högskola

• Project title: Advanced Digital Forensics with Focus on Deep Learning Foundation Models Research
  Project duration: 2026-01-16 – 2026-08-01
  Principal Investigator: Shizhen Chang, Linköpings universitet

• Project title: Diffusion models for data-driven risk management
  Project duration: 2026-01-16 – 2026-08-01
  Principal Investigator: Joakim Andén-Pantera, Kungliga Tekniska högskolan

• Project title: Machine learning for protein structure prediction
  Project duration: 2026-02-01 – 2026-08-01
  Principal Investigator: Arne Elofsson, Stockholms universitet

• Project title: Machine learning models for materials
  Project duration: 2026-02-01 – 2026-08-01
  Principal Investigator: Paul Erhart, Chalmers tekniska högskola

• Project title: TinyML_Data Analysis
  Project duration: 2026-01-30 – 2026-08-01
  Principal Investigator: Hui Han, Luleå tekniska universitet

• Project title: Generative deep learning with human feedback for animating 3D characters in social settings
  Project duration: 2026-01-30 – 2026-08-01
  Principal Investigator: Gustav Eje Henter, Kungliga Tekniska högskolan

• Project title: Spoken conversational AI
  Project duration: 2026-01-30 – 2026-08-01
  Principal Investigator: Gabriel Skantze, Kungliga Tekniska högskolan

• Project title: Machine Learning for Scientific Discovery
  Project duration: 2026-02-01 – 2026-08-01
  Principal Investigator: Hossein Azizpour, Kungliga Tekniska högskolan

• Project title: Towards a Foundation Model for High-Content Phenotypic Screening
  Project duration: 2026-02-01 – 2026-08-01
  Principal Investigator: Giovanni Volpe, Göteborgs universitet

• Project title: Super-resolution neuroimages from widely accessible clinical scans
  Project duration: 2026-02-01 – 2026-08-01
  Principal Investigator: Jacob Vogel, Lunds universitet

• Project title: Environment-Agnostic Autotelic Goal-Conditioned Reinforcement Learning
  Project duration: 2026-01-30 – 2026-08-01
  Principal Investigator: Jacek Malec, Lunds universitet

• Project title: Thinking Fast and Slow: Real-time Speech Generation for Conversational AI
  Project duration: 2026-02-01 – 2026-08-01
  Principal Investigator: Gabriel Skantze, Kungliga Tekniska högskolan

• Project title: Runtime-guided LLM-based crash identification and repair for ML notebooks
  Project duration: 2026-02-10 – 2026-09-01
  Principal Investigator: Daniel Varro, Linköpings universitet

• Project title: Can microbes distinguish friend from foe?
  Project duration: 2026-03-01 – 2026-09-01
  Principal Investigator: Laura Carroll, Umeå universitet

• Project title: Integrative Analysis of Quantitative Trait Loci
  Project duration: 2026-02-11 – 2026-09-01
  Principal Investigator: Wen Zhong, Linköpings universitet

• Project title: Advancing Neuro-symbolic Approaches for Automated Planning
  Project duration: 2026-02-12 – 2026-09-01
  Principal Investigator: Jendrik Seipp, Linköpings universitet

• Project title: Safe and Socially-Compliant Autonomous Robots in Dynamic Environments
  Project duration: 2026-02-12 – 2026-09-01
  Principal Investigator: Iolanda Leite, Kungliga Tekniska högskolan

• Project title: ML Workloads Allocation for CloudRobotics WASP-NEST Continuation
  Project duration: 2026-03-01 – 2026-09-01
  Principal Investigator: Florian Pokorny, Kungliga Tekniska högskolan

• Project title: Generative AI and foundation models for atypical femur fractures
  Project duration: 2026-03-01 – 2026-09-01
  Principal Investigator: Jörg Schilcher, Linköpings universitet

• Project title: Drug Intraction and Side effect prediction
  Project duration: 2026-02-27 – 2026-09-01
  Principal Investigator: Golnaz Taheri, Kungliga Tekniska högskolan

• Project title: Structure determination of transmembrane protein complexes
  Project duration: 2026-03-01 – 2026-09-01
  Principal Investigator: Linda Johansson, Göteborgs universitet

• Project title: Large-Scale Spatio-Temporal Reasoning and Learning
  Project duration: 2026-03-01 – 2026-09-01
  Principal Investigator: Fredrik Heintz, Linköpings universitet

• Project title: Berzelius Access for Training Activities
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Xuan Gu, Linköpings universitet

• Project title: Synthetic high-dimensional cohorts for studies of neurodegenerative diseases
  Project duration: 2026-03-02 – 2026-10-01
  Principal Investigator: Niklas Mattsson-Carlgren, Lunds universitet

• Project title: Geometric robot learning
  Project duration: 2026-03-02 – 2026-10-01
  Principal Investigator: Noémie Jaquier, Kungliga Tekniska högskolan

• Project title: Numerical modeling of scaled-up superconducting qubit systems with GPUs
  Project duration: 2026-03-03 – 2026-10-01
  Principal Investigator: Jorge Fernández-Pendás, Chalmers tekniska högskola

• Project title: Universal design of peptide binders for therapeutic and diagnostic modalities
  Project duration: 2026-03-03 – 2026-10-01
  Principal Investigator: Patrick Bryant, Stockholms universitet

• Project title: Retraining Boltz (Hopper allocation)
  Project duration: 2026-03-05 – 2026-08-01
  Principal Investigator: Arne Elofsson, Stockholms universitet

• Project title: AI for Molecular Engineering
  Project duration: 2026-03-05 – 2026-10-01
  Principal Investigator: Rocio Mercado, Chalmers tekniska högskola

• Project title: Adult Human Striatal Neurogenesis
  Project duration: 2026-03-05 – 2026-10-01
  Principal Investigator: Jonas Frisén, Karolinska Institutet

• Project title: Protein structure prediction and AI in virtual screening
  Project duration: 2026-03-08 – 2026-10-01
  Principal Investigator: Jens Carlsson, Uppsala universitet

• Project title: Cryo-EM of native membrane protein complexes underlying fertilization
  Project duration: 2026-03-08 – 2026-10-01
  Principal Investigator: Luca Jovine, Karolinska Institutet

• Project title: Deep Learning for Context-aware Motion Planning of Autonomus Vehicles
  Project duration: 2026-03-08 – 2026-10-01
  Principal Investigator: Paolo Falcone, Chalmers tekniska högskola

• Project title: Diffusion models for PDEs
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Zheng Zhao, Linköpings universitet

• Project title: Generative deep learning for data-centric machine learning
  Project duration: 2026-03-08 – 2026-10-01
  Principal Investigator: Gabriel Eilertsen, Linköpings universitet

• Project title: Exploration of dark microbial proteomes
  Project duration: 2026-03-08 – 2026-10-01
  Principal Investigator: Courtney Stairs, Lunds universitet

• Project title: Enhancing the resolvability of cryo-EM maps in protein-ligand complexes using deep learning
  Project duration: 2026-03-16 – 2026-10-01
  Principal Investigator: Erik Lindahl, Linköpings universitet

• Project title: Robust and scalable forward and inverse learning
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Prashant Singh, Uppsala universitet

• Project title: Using a combination of RF diffusion and AF_unmasked for de novo antibody and small binder design
  Project duration: 2026-03-16 – 2026-10-01
  Principal Investigator: Marta Carroni, Stockholms universitet

• Project title: Foundation models meet graph-based learning to advance spatial biology towards patient-specific cancer immunotherapy
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Natasa Sladoje, Uppsala universitet

• Project title: Crowdsourced mapping for autonomous driving
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Gustaf Hendeby, Linköpings universitet

• Project title: MultiPRESS: Deep learning for super-resolution 4D Flow MRI
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: David Marlevi, Karolinska Institutet

• Project title: Deep learning models for modelling genetic variation
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Carl Nettelblad, Uppsala universitet

• Project title: Embodied AI for Autonomous Robots
  Project duration: 2026-03-21 – 2026-10-01
  Principal Investigator: Olov Andersson, Kungliga Tekniska högskolan

• Project title: Learning design principles for photoinduced molecular processes from ML-enhanced quantum dynamics simulations
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Nanna Holmgaard List, Kungliga Tekniska högskolan

• Project title: Robust machine learning for multimodal multitask learning
  Project duration: 2026-03-21 – 2026-10-01
  Principal Investigator: Johanna Björklund, Umeå universitet

• Project title: Scalable Learning and Optimization for Graph-Structured Data and Reliable Systems
  Project duration: 2026-03-26 – 2026-10-01
  Principal Investigator: Aristides Gionis, Kungliga Tekniska högskolan

• Project title: Deep Learning for Image-based Localization and Mapping
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Viktor Larsson, Lunds universitet

• Project title: Multimodal representations of proteins (SubCellVS)
  Project duration: 2026-03-31 – 2026-10-01
  Principal Investigator: Emma Lundberg, Kungliga Tekniska högskolan

• Project title: Representation Learning Methods in Computer Vision
  Project duration: 2026-03-31 – 2026-10-01
  Principal Investigator: Atsuto Maki, Kungliga Tekniska högskolan

• Project title: Representation Learning for Machine Learning and Robotics
  Project duration: 2026-03-31 – 2026-10-01
  Principal Investigator: Danica Kragic Jensfelt, Kungliga Tekniska högskolan

• Project title: DL4NLP: Deep Learning for Natural Language Processing
  Project duration: 2026-03-31 – 2026-10-01
  Principal Investigator: Marco Kuhlmann, Linköpings universitet

• Project title: Optimization Theory and Methods for Machine Learning with Applications in Neural Network Training
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Alp Yurtsever, Umeå universitet

• Project title: Accelerating Physical Simulations with Efficient Generative Models
  Project duration: 2026-03-31 – 2026-10-01
  Principal Investigator: Sebastian Dalleiger, Kungliga Tekniska högskolan

• Project title: Deep Learning for Autonomous Driving
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Lars Hammarstrand, Chalmers tekniska högskola

• Project title: Graph-based, spatial, temporal, and generative machine learning
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Fredrik Lindsten, Linköpings universitet

• Project title: Document Analysis
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Elisa Hope Barney Smith, Luleå tekniska universitet

• Project title: Computational Experiments for Automatic Program Repair, Prof Monperrus, WASP/KTH
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Martin Monperrus, Kungliga Tekniska högskolan

• Project title: MUCPLUG
  Project duration: 2026-03-31 – 2026-10-01
  Principal Investigator: George Birchenough, Göteborgs universitet

• Project title: Modifying and retraining AlphaFold2 to integrate experimental information
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Dag Ahren, Lunds universitet

• Project title: Growing and Looping for Vision Foundation Models
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Karl Henrik Johansson, Kungliga Tekniska högskolan

• Project title: Deep Learning Models of Cancer Mechanisms
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Avlant Nilsson, Karolinska Institutet

• Project title: TEAMLAB – Team-sports Exploratory Advanced Machine Learning for Automated Broadcasting
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Mikael Nilsson, Lunds universitet

• Project title: Predicting Moisture Content in Timber Drying
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Sebastian Mair, Linköpings universitet

• Project title: Analysis of cryo electron microscopy data with artificial intelligence
  Project duration: 2026-04-01 – 2026-10-01
  Principal Investigator: Sebastian Westenhoff, Uppsala universitet

• Project title: Structure and quality determination of novel AAV and interacting binders
  Project duration: 2026-04-01 – 2026-06-15
  Principal Investigator: Johan Rockberg, Kungliga Tekniska högskolan

• Project title: Resilient federated learning (FL) based autonomous driving and FL Initialisation for security
  Project duration: 2026-04-07 – 2026-11-01
  Principal Investigator: Panagiotis Papadimitratos, Kungliga Tekniska högskolan

• Project title: Deep learning methodologies for automatic ECG classification
  Project duration: 2026-04-21 – 2026-11-01
  Principal Investigator: Thomas Schön, Uppsala universitet

• Project title: Training large language models with single-cell genomics to learn regulatory grammar
  Project duration: 2026-04-21 – 2026-11-01
  Principal Investigator: Rickard Sandberg, Karolinska Institutet

• Project title: Speech foundation model bias and finetuning
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Éva Székely, Kungliga Tekniska högskolan

• Project title: An Empirical Study on LLM-Proposed Performance Improvements in Real-World Software
  Project duration: 2026-04-23 – 2026-11-01
  Principal Investigator: Philipp Leitner, Chalmers tekniska högskola

• Project title: Embodied perception for interacting with the 3D world
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Hedvig Kjellström, Kungliga Tekniska högskolan

• Project title: Multimodal deep learning
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Ekta Vats, Uppsala universitet

• Project title: Global medium-term weather forecasting with PEAR
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Jan Gerken, Chalmers tekniska högskola

• Project title: Foundation Models for Data-driven Human Cell Simulation
  Project duration: 2026-04-29 – 2026-11-01
  Principal Investigator: Wei Ouyang, Kungliga Tekniska högskolan

• Project title: Robotic Foundation Models: Vision-Language-Action Frameworks for Generalist Robotics – extension request PR3
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Martin Magnusson, Örebro universitet

• Project title: Perovskite materials for H2 production and CO2 capture II
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Magnus Rydén, Chalmers tekniska högskola

• Project title: Conformational sampling and docking with AlphaFold
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Björn Wallner, Linköpings universitet

• Project title: Evaluating Large Language Models as Research Assistants: Potentials and Shortcomings
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Dejan Manojlo Kostic, Kungliga Tekniska högskolan

• Project title: Deep Learning and Generative AI for Computer Vision
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Fredrik Kahl, Chalmers tekniska högskola

• Project title: Datasets for Autonomous Driving
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Paolo Falcone, Chalmers tekniska högskola

• Project title: AI-driven cardiovascular imaging
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Tino Ebbers, Linköpings universitet

• Project title: AI-driven Discovery and Classification of Glycosylation Machinery in Bacteroidota
  Project duration: 2026-04-29 – 2026-11-01
  Principal Investigator: Andre Mateus, Umeå universitet

• Project title: Scalable Multimodal Identity Modeling and Analysis
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Niklas Carlsson, Linköpings universitet

• Project title: Deep learning based species identification of bacteria using time-lapse of growth in microfluidic chip imaged by phase contrast microscopy
  Project duration: 2026-05-01 – 2026-11-01
  Principal Investigator: Carolina Wählby, Uppsala universitet

• Project title: Berzelius Common Datasets
  Project duration: 2026-05-06 – 2026-12-01
  Principal Investigator: Xuan Gu, Linköpings universitet

• Project title: ML workload allocation for WASP-NEST-AIR2 and WASP funded projects
  Project duration: 2026-05-21 – 2026-12-01
  Principal Investigator: Monowar Bhuyan, Umeå universitet

• Project title: SELLMA - The Swedish Large Language Model Arena
  Project duration: 2026-05-22 – 2026-12-01
  Principal Investigator: Erik Lindahl, Linköpings universitet

• Project title: Computational Microscopy for Cell Biology lab
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Juliette Griffie, Stockholms universitet

• Project title: TissueGraph: Cell-to-cell Spatial Alignment
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Sanja Vickovic, Uppsala universitet

• Project title: Trajectory Prediction Model Dataset Generalization
  Project duration: 2026-05-30 – 2026-12-01
  Principal Investigator: Erik Frisk, Linköpings universitet

• Project title: Data-Driven Determination of Macromolecular Structures
  Project duration: 2026-05-30 – 2026-12-01
  Principal Investigator: Nicholas Pearce, Linköpings universitet

• Project title: A foundation model for mass spectra of peptides
  Project duration: 2026-05-30 – 2026-12-01
  Principal Investigator: Lukas Käll, Kungliga Tekniska högskolan

• Project title: Multimodal breast cancer image data registration and analysis
  Project duration: 2026-05-30 – 2026-12-01
  Principal Investigator: Ida-Maria Sintorn, Uppsala universitet

• Project title: Investigating the Role of Data Heterogeneity in AI Safety and Fairness
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Stefano Sarao Mannelli, Chalmers tekniska högskola

• Project title: Artificial Intelligence for Prostate Cancer Diagnosis and Prognostication
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Kimmo Kartasalo, Karolinska Institutet

• Project title: Computational Experiments for Automatic Program Repair, Prof Monperrus, WASP/KTH
  Project duration: 2026-05-30 – 2026-12-01
  Principal Investigator: Martin Monperrus, Kungliga Tekniska högskolan

• Project title: AlphaFold2 prediction of the virus-host interactome
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Vasili Hauryliuk, Lunds universitet

• Project title: Learning heterogeneity representations in molecular image data
  Project duration: 2026-05-30 – 2026-12-01
  Principal Investigator: Björn Forsberg, Linköpings universitet

• Project title: Deep Learning for imaging and omics integration
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Gisele Miranda, Kungliga Tekniska högskolan

• Project title: Homological determination of phonon mixtures
  Project duration: 2026-05-30 – 2026-12-01
  Principal Investigator: Wojciech Chachólski, Kungliga Tekniska högskolan

• Project title: PRAADA-designer
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Sanja Vickovic, Uppsala universitet

• Project title: Multimodal Natural Conversation Perception and Generation
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: André Tiago Abelho Pereira, Kungliga Tekniska högskolan

• Project title: Automated Proof Strategy and Formalization in Network Science
  Project duration: 2026-06-01 – 2026-12-01
  Principal Investigator: Fiona Skerman, Uppsala universitet